Gene | Usp48 |
Chromosome | 4 |
Deletion Start | 137,594,386 |
Deletion End | 137,623,384 |
Deletion Size | 28,999 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 137,594,695 | 137,594,717 | GCTTAGTAAGTAACGCTGGAGTG |
TUP | 137,594,721 | 137,594,745 | TTTGATCTTGGGCATAGCTGTGCGC |
TUR | 137,594,764 | 137,594,782 | GTTCGCTGTCGGCAAGTTC |
TDF | 137,623,241 | 137,623,262 | TGACGGCGTTTGTTTCTGATAC |
TDP | 137,623,268 | 137,623,297 | CTCTAGTGAAAGCCCTTTGTAAGGACTGCG |
TDR | 137,623,313 | 137,623,331 | TTCTTCAGGCGCAGGACAC |
PCR Primers
Primer | Sequence |
SU | GTCGGATTACATGGGCTTTC |
SD | GCACACATATCCACTAACAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 91 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13228A-A4 | VGB6 | C57BL/6NTac | |
13228A-B6 | VGB6 | C57BL/6NTac | |
13228A-G9 | VGB6 | C57BL/6NTac | |
13228A-E3 | VGB6 | C57BL/6NTac | |
13228A-F8 | VGB6 | C57BL/6NTac | |