Gene | Cck |
Chromosome | 9 |
Deletion Start | 121,494,527 |
Deletion End | 121,490,047 |
Deletion Size | 4,481 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 121,493,686 | 121,493,704 | GCGCCTTGCCCTTTGAATG |
TUP | 121,493,654 | 121,493,683 | TCTTTCTGTGCCCAAACCTCTCATTGTAGA |
TUR | 121,493,630 | 121,493,648 | GGTTCGCTCTGCTCTCATC |
TDF | 121,490,951 | 121,490,972 | GACTCAGGAGTCTGCTCTCATC |
TDP | 121,490,925 | 121,490,948 | CCACTGTGAGGGTCCAAGGACTCA |
TDR | 121,490,872 | 121,490,893 | TCAGACAGCTCAGTGGGTAAAG |
PCR Primers
Primer | Sequence |
SU | CGTGTTTGTCTGTCCGTTTG |
SD | ACAGGCCACCTTGCATTTAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 75 bp | + | + | - |
TDF | TDR | 101 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13276A-C12 | VGB6 | C57BL/6NTac | |
13276A-E2 | VGB6 | C57BL/6NTac | |
13276A-G1 | VGB6 | C57BL/6NTac | |
13276A-E4 | VGB6 | C57BL/6NTac | |
13276A-E3 | VGB6 | C57BL/6NTac | |