Gene | Ldlr |
Chromosome | 9 |
Deletion Start | 21,723,781 |
Deletion End | 21,748,279 |
Deletion Size | 24,499 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 21,724,434 | 21,724,455 | GTCCCTACCTTGTCCCTACTTC |
TUP | 21,724,458 | 21,724,480 | TGGTTTGGTGCAGATGTGCCTCA |
TUR | 21,724,503 | 21,724,520 | TCCCTGCCTGATGGTCTC |
TDF | 21,748,079 | 21,748,099 | TGCCATGCTTGTGTATAGTCC |
TDP | 21,748,107 | 21,748,134 | CTGATTGTTTCCTGTGTTTCCGCTTTGC |
TDR | 21,748,156 | 21,748,175 | CATGCCACATCGTCCTCCAG |
PCR Primers
Primer | Sequence |
SU | TCTGTGGGAGGAATTTGAGG |
SD | AAGGCTCTGGGATGAAGGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 97 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13304B-C8 | VGB6 | C57BL/6NTac | |
13304B-D4 | VGB6 | C57BL/6NTac | |
13304B-D9 | VGB6 | C57BL/6NTac | |
13304B-E2 | VGB6 | C57BL/6NTac | |
13304B-E3 | VGB6 | C57BL/6NTac | |
13304B-G6 | VGB6 | C57BL/6NTac | |