Gene | Phb |
Chromosome | 11 |
Deletion Start | 95,668,067 |
Deletion End | 95,679,935 |
Deletion Size | 11,869 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 95,668,125 | 95,668,144 | GCGTGGTGAACTCTGCTTTG |
TUP | 95,668,155 | 95,668,176 | AGGCGCGGAAGAGCTTTCTGCA |
TUR | 95,668,185 | 95,668,207 | ACACATGGGCTATGCAGATCAAC |
TDF | 95,679,274 | 95,679,293 | GGCTTGCTTCAGGCTTTCAG |
TDP | 95,679,296 | 95,679,315 | AGCCGCCCATCTGCCATCGC |
TDR | 95,679,337 | 95,679,356 | ATCCCGGTGTGGTGGCTAAC |
PCR Primers
Primer | Sequence |
SU | GTTCCTCGTGGGTACAAAGC |
SD | AATGGCTGGAAACACTGAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13311A-H12 | VGB6 | C57BL/6NTac | |
13311A-B3 | VGB6 | C57BL/6NTac | |
13311A-D4 | VGB6 | C57BL/6NTac | |
13311A-H2 | VGB6 | C57BL/6NTac | |
13311A-E5 | VGB6 | C57BL/6NTac | |
13311A-D5 | VGB6 | C57BL/6NTac | |