Gene | Ptprcap |
Chromosome | 19 |
Deletion Start | 4,154,704 |
Deletion End | 4,156,600 |
Deletion Size | 1,897 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 4,154,888 | 4,154,906 | CCTGGGCACAGCCCTATTC |
TUP | 4,154,908 | 4,154,932 | AAGACCCTTGGGACAGTCCTCCACC |
TUR | 4,154,966 | 4,154,988 | AGCATACCAAGCTCTGGAGAAAG |
TDF | 4,155,669 | 4,155,690 | TCACCATGAGGCTGTGAAGTAG |
TDP | 4,155,691 | 4,155,715 | TGTCTGAGCAAAGGGAAGGCCAACG |
TDR | 4,155,759 | 4,155,779 | CCTTCAACCCAACCCTGTAAC |
PCR Primers
Primer | Sequence |
SU | ATGCACACTTCCTCCCTTTG |
SD | GAGAGGGCAGCTGTGAGAAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 101 bp | + | + | - |
TDF | TDR | 111 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13316A-A11 | VGB6 | C57BL/6NTac | |
13316A-B4 | VGB6 | C57BL/6NTac | |
13316A-C4 | VGB6 | C57BL/6NTac | |
13316A-D1 | VGB6 | C57BL/6NTac | |
13316A-F6 | VGB6 | C57BL/6NTac | |
13316A-F7 | VGB6 | C57BL/6NTac | |