Gene | Epha10 |
Chromosome | 4 |
Deletion Start | 124,883,906 |
Deletion End | 124,915,744 |
Deletion Size | 31,839 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 124,884,515 | 124,884,533 | CAGGAGAACTGGCTGTGTC |
TUP | 124,884,535 | 124,884,560 | ACGTACAGAAATGTGAGCTCCGTGGA |
TUR | 124,884,562 | 124,884,580 | AGGCAGTGGGCAGCATTTG |
TDF | 124,914,963 | 124,914,982 | CCACCTCCTCGTACCTGTTC |
TDP | 124,914,983 | 124,915,008 | AGGTGTGAAGCTCAGCCCATTGTCCA |
TDR | 124,915,013 | 124,915,034 | CCTGAAGCAGGGATGTCAGATG |
PCR Primers
Primer | Sequence |
SU | TCACAAGCCTCAGGGAATGAA |
SD | AGGACAACAACTGAAACTCTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 66 bp | + | + | - |
TDF | TDR | 72 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13336A-F3 | VGB6 | C57BL/6NTac | |
13336A-H11 | VGB6 | C57BL/6NTac | |