Gene | Cst3 |
Chromosome | 2 |
Deletion Start | 148,875,374 |
Deletion End | 148,871,859 |
Deletion Size | 3,516 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 148,874,562 | 148,874,583 | CGAACACTCAGGTCCTTCACTC |
TUP | 148,874,530 | 148,874,557 | TCTCAGTTTGCTGGTCTCCACTATGGAC |
TUR | 148,874,492 | 148,874,514 | GGCTGCCAGACTGGATAGAAATG |
TDF | 148,872,806 | 148,872,829 | CCATCTGATGAGGGTAGGTACTTG |
TDP | 148,872,778 | 148,872,805 | ATATCAGCCTAAGGGCAATCGTGCAGGC |
TDR | 148,872,731 | 148,872,750 | TGTGCCCAACACCTGTATCC |
PCR Primers
Primer | Sequence |
SU | AGGGCACAGAAGAGGAACTG |
SD | CCCATAGACACCAGTGACCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 99 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13449A-A2 | VGB6 | C57BL/6NTac | |
13449A-A9 | VGB6 | C57BL/6NTac | |
13449A-A10 | VGB6 | C57BL/6NTac | |
13449A-B4 | VGB6 | C57BL/6NTac | |
13449A-F2 | VGB6 | C57BL/6NTac | |
13449A-H7 | VGB6 | C57BL/6NTac | |