Gene | Cyc1 |
Chromosome | 15 |
Deletion Start | 76,343,567 |
Deletion End | 76,345,789 |
Deletion Size | 2,223 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 76,344,047 | 76,344,068 | CTCTGGGTCACTTAGGCTTGTC |
TUP | 76,344,069 | 76,344,094 | TCCTGGGTTAAGTTCCACGAGCATTC |
TUR | 76,344,097 | 76,344,115 | CGGCTCTGGAGGGCAAATG |
TDF | 76,345,508 | 76,345,527 | GGATGTCGCCACCTTCCTTC |
TDP | 76,345,530 | 76,345,554 | TGGGCATCAGAACCAGAGCATGACC |
TDR | 76,345,572 | 76,345,591 | GCCCAACCGTTTACCTTGAG |
PCR Primers
Primer | Sequence |
SU | TGCTGTTAATCCCACACAGG |
SD | CATGCAAACAGTGCTGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 69 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13456A-A3 | VGB6 | C57BL/6NTac | |
13456A-B9 | VGB6 | C57BL/6NTac | |
13456A-H6 | VGB6 | C57BL/6NTac | |
13456A-D9 | VGB6 | C57BL/6NTac | |
13456A-F9 | VGB6 | C57BL/6NTac | |
13456A-E8 | VGB6 | C57BL/6NTac | |