Gene | Hspb1 |
Chromosome | 5 |
Deletion Start | 135,888,062 |
Deletion End | 135,889,442 |
Deletion Size | 1,381 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 135,888,325 | 135,888,343 | CTCGGAGATCCGACAGACG |
TUP | 135,888,348 | 135,888,367 | ATCGCTGGCGCGTGTCCCTG |
TUR | 135,888,437 | 135,888,456 | TCTGGGCACAAGGGAAACTC |
TDF | 135,889,016 | 135,889,035 | GGGCTGCTTCTGACCTTCTG |
TDP | 135,889,039 | 135,889,059 | CCACCCACAGGCAAGCACGAA |
TDR | 135,889,060 | 135,889,079 | CCATGTTCGTCCTGCCTTTC |
PCR Primers
Primer | Sequence |
SU | TCCAGCTACCGGTATTACGC |
SD | GGTTATCTCTTTTCCCACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 132 bp | + | + | - |
TDF | TDR | 64 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13573A-B8 | VGB6 | C57BL/6NTac | |
13573A-B11 | VGB6 | C57BL/6NTac | |
13573A-C1 | VGB6 | C57BL/6NTac | |
13573A-C6 | VGB6 | C57BL/6NTac | |
13573A-C12 | VGB6 | C57BL/6NTac | |
13573A-G11 | VGB6 | C57BL/6NTac | |