| Gene | Lrrc45 |
| Chromosome | 11 |
| Deletion Start | 120,714,312 |
| Deletion End | 120,720,851 |
| Deletion Size | 6,540 |
| Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
| Primer | Start | End | Sequence |
| TUF | 120,715,151 | 120,715,171 | GCAACAACCTCCGAGCTACAG |
| TUP | 120,715,176 | 120,715,199 | TGAGGCTCTGGGAAAGCTCCTTCG |
| TUR | 120,715,209 | 120,715,231 | GGCCTACCTACCTCTGAATAGAC |
| TDF | 120,720,689 | 120,720,709 | CGGCTCAAAGAGGCAGAAATC |
| TDP | 120,720,715 | 120,720,735 | TATCCGGGACGAAGAGGCCCA |
| TDR | 120,720,761 | 120,720,780 | CCCTGCACGTAAGCCAAGAC |
PCR Primers
| Primer | Sequence |
| SU | TACCAATAGCCATGCCTTCC |
| SD | GCAGAAAGGAACTGGACGAG |
| LacInR | TTGACTGTAGCGGCTGATGTTG |
| LacInf | GGTAAACTGGCTCGGATTAGGG |
| NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
| NeoInF | TTCGGCTATGACTGGGCACAACAG |
| LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
| NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
| Forward Primer | Reverse Primer | Length | WT | HET | KO |
| SU | LacZRev | bp | - | + | + |
| TUF | TUR | 81 bp | + | + | - |
| TDF | TDR | 92 bp | + | + | - |
| NeoFwd | SD | bp | - | + | + |
| LacInf | LacInR | 210 bp | - | + | + |
| NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
| Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
| 13611A-F9 | VGB6 | C57BL/6NTac | |
