Gene | Skiv2l |
Chromosome | 17 |
Deletion Start | 34,850,152 |
Deletion End | 34,839,376 |
Deletion Size | 10,777 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 34,849,862 | 34,849,883 | TGACCCTCACCTTTGACCTATG |
TUP | 34,849,827 | 34,849,855 | AAAGAAATTCCACCCTGCTCACAGGAGGA |
TUR | 34,849,794 | 34,849,812 | AGCCGGAGGCCAAGATGAC |
TDF | 34,840,325 | 34,840,344 | GTCTGACCAGTCGCTGTTAC |
TDP | 34,840,303 | 34,840,324 | TGCTCCCTGAGTACCACCAGCG |
TDR | 34,840,280 | 34,840,301 | CATCCTGCCCACTTACCTCTAC |
PCR Primers
Primer | Sequence |
SU | AGACGAAGCCCTCACCTGA |
SD | GGCTCAATCTCTGGCTTCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 90 bp | + | + | - |
TDF | TDR | 65 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13851A-F2 | VGB6 | C57BL/6NTac | |
13851A-C11 | VGB6 | C57BL/6NTac | |
13851A-A8 | VGB6 | C57BL/6NTac | |