Gene | Ecscr |
Chromosome | 18 |
Deletion Start | 35,721,407 |
Deletion End | 35,713,366 |
Deletion Size | 8,042 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 18
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 35,720,647 | 35,720,669 | CAGGTAGGGATTAGGAAGCAGAG |
TUP | 35,720,618 | 35,720,645 | TCAGCAAAGTTAGGAGTTCTTGTGGCCA |
TUR | 35,720,592 | 35,720,614 | GGGACATACAGACACCCAGAAAG |
TDF | 35,713,821 | 35,713,843 | GTAGAGTTTTCTGGCATGAGGAC |
TDP | 35,713,800 | 35,713,820 | TGAAGGCCCAGTGCTCCGTGG |
TDR | 35,713,774 | 35,713,796 | GGATGGAGGACCAGGGAGTAAAG |
PCR Primers
Primer | Sequence |
SU | TGAAATGACTGGAATTCGACC |
SD | AAAGAAATTGGATTCCAGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 70 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13999A-A4 | VGB6 | C57BL/6NTac | |
13999A-B3 | VGB6 | C57BL/6NTac | |
13999A-B8 | VGB6 | C57BL/6NTac | |
13999A-E12 | VGB6 | C57BL/6NTac | |
13999A-F1 | VGB6 | C57BL/6NTac | |
13999A-E7 | VGB6 | C57BL/6NTac | |