Gene | Cdx1 |
Chromosome | 18 |
Deletion Start | 61,036,117 |
Deletion End | 61,019,700 |
Deletion Size | 16,418 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 18
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 61,035,398 | 61,035,417 | GGCAAGGCCACAAGTAGAAG |
TUP | 61,035,375 | 61,035,396 | CCAGATGCCCAGTCGTCGCAGC |
TUR | 61,035,326 | 61,035,347 | GCAGGGTTAGGAGTGGAAGAAG |
TDF | 61,020,528 | 61,020,549 | CCCTTCCCTCATTGCCCTTCTG |
TDP | 61,020,501 | 61,020,526 | TCCTCAGGTAAGACCCGAACCAAGGA |
TDR | 61,020,466 | 61,020,485 | GGCGTTGGTGGTCTGTGTAG |
PCR Primers
Primer | Sequence |
SU | TTCTCCACCTGTAACCCAGG |
SD | CTCGTTGAGCCCTCTGAATC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14287A-E9 | VGB6 | C57BL/6NTac | |
14287A-B4 | VGB6 | C57BL/6NTac | |
14287A-C11 | VGB6 | C57BL/6NTac | |
14287A-A10 | VGB6 | C57BL/6NTac | |