Gene | Cntn1 |
Chromosome | 15 |
Deletion Start | 92,216,390 |
Deletion End | 92,254,130 |
Deletion Size | 37,741 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 92,216,716 | 92,216,738 | GACAGCATGGCTTAAATCAACAC |
TUP | 92,216,746 | 92,216,775 | TGTAGAATCGGGAGAGGTGGTTGGTATTTC |
TUR | 92,216,779 | 92,216,802 | GGTATCTTCGATTCTAGGCAGGTG |
TDF | 92,253,157 | 92,253,178 | GCAGTGGACTAGATGGGAGAAC |
TDP | 92,253,180 | 92,253,207 | TGGAAGGTAAAGGGTATGCCATCACTGG |
TDR | 92,253,209 | 92,253,231 | CACAGAGTCTCATAGCTGGTCAC |
PCR Primers
Primer | Sequence |
SU | AAACCTGGTGATTTGCCATC |
SD | TCTAGACTGTTTTCAACAATTCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 75 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14309B-G11 | VGB6 | C57BL/6NTac | |