Gene | Arhgef10 |
Chromosome | 8 |
Deletion Start | 14,925,187 |
Deletion End | 14,954,924 |
Deletion Size | 29,738 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 14,925,611 | 14,925,629 | GACTGGGCCAGCATTCTTC |
TUP | 14,925,631 | 14,925,656 | CTGATTCCTTCCCTGTGGGCAGTTCA |
TUR | 14,925,690 | 14,925,710 | CCGTCCTCTGTGTCTATCAAC |
TDF | 14,954,421 | 14,954,442 | CCAATTTCCGACAGGTTGTGAG |
TDP | 14,954,448 | 14,954,474 | ACATTCTGGGCTCCATTGTTGAGAGCG |
TDR | 14,954,479 | 14,954,500 | CCGGAGAGCATCTACATAGTTC |
PCR Primers
Primer | Sequence |
SU | TGTTGGTTGAGATGGCTCTG |
SD | ACGTACACTTAACCCTTTCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 100 bp | + | + | - |
TDF | TDR | 80 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14354A-G10 | VGB6 | C57BL/6NTac | |
14354C-C6 | VGB6 | C57BL/6NTac | |
14354C-G8 | VGB6 | C57BL/6NTac | |