Gene | Snx18 |
Chromosome | 13 |
Deletion Start | 113,618,392 |
Deletion End | 113,594,508 |
Deletion Size | 23,885 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 113,617,761 | 113,617,780 | CAAGCGTCTGGAGCCAAGAG |
TUP | 113,617,731 | 113,617,754 | CACGGTGAGCCGCAACCTCAATCG |
TUR | 113,617,709 | 113,617,730 | CGACTTGACGAAGGTGGAGAAG |
TDF | 113,595,428 | 113,595,449 | GCTGTCAGGCACATCATGTAGG |
TDP | 113,595,405 | 113,595,427 | CTCGGGCTCTGGGTAAACCTGGC |
TDR | 113,595,384 | 113,595,402 | TGTCAGGGCACCCAAGTTC |
PCR Primers
Primer | Sequence |
SU | GCAATGGATTAGCTCTGCTG |
SD | ACCCAGGTGGGACAGAAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 72 bp | + | + | - |
TDF | TDR | 66 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14409A-A4 | VGB6 | C57BL/6NTac | |
14409A-C2 | VGB6 | C57BL/6NTac | |
14409A-G11 | VGB6 | C57BL/6NTac | |
14409A-F5 | VGB6 | C57BL/6NTac | |
14409A-H4 | VGB6 | C57BL/6NTac | |
14409A-D5 | VGB6 | C57BL/6NTac | |