Gene | Csl |
Chromosome | 10 |
Deletion Start | 99,759,198 |
Deletion End | 99,757,642 |
Deletion Size | 1,557 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 99,759,138 | 99,759,156 | CCACCCTGCCTTGTCCTTG |
TUP | 99,759,102 | 99,759,129 | CATGCCAGTGCTTCTTCCACGAACTTGA |
TUR | 99,759,063 | 99,759,082 | TGGCTTGCTCCTTGGGTATC |
TDF | 99,758,380 | 99,758,402 | GTGGTAATGTAAGTGCCCACACC |
TDP | 99,758,357 | 99,758,379 | AGCCATTTGGTGGGCAGTGCCCT |
TDR | 99,758,274 | 99,758,296 | CAAGCACCTCCTGATTTGCTAGC |
PCR Primers
Primer | Sequence |
SU | GGGAGAAGTTCTAAACCGCC |
SD | ATCCACTATGATTTCTATGGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 129 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14519A-G5 | VGB6 | C57BL/6NTac | |
14519A-B9 | VGB6 | C57BL/6NTac | |
14519A-B11 | VGB6 | C57BL/6NTac | |
14519A-G2 | VGB6 | C57BL/6NTac | |