Gene | Ggcx |
Chromosome | 6 |
Deletion Start | 72,414,410 |
Deletion End | 72,430,156 |
Deletion Size | 15,747 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 72,415,144 | 72,415,166 | GGTTTGTTCAACCTGCTTTCTTC |
TUP | 72,415,168 | 72,415,189 | ACCAGTAGGGATCACCTGCCCA |
TUR | 72,415,223 | 72,415,243 | TGGCCCGTAAGCATTTATGTG |
TDF | 72,429,509 | 72,429,528 | CCAACACCTCTGGTCCAAAC |
TDP | 72,429,530 | 72,429,555 | TTTCTCAGACGACAGAGGAAGCTCCA |
TDR | 72,429,582 | 72,429,603 | CGGAGAAATCGCTCATGGAAAG |
PCR Primers
Primer | Sequence |
SU | AAGCAGGCGTCGAGATTG |
SD | AGAACTTATAAGGGGAAAAAATG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 100 bp | + | + | - |
TDF | TDR | 95 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14784A-B11 | VGB6 | C57BL/6NTac | |
14784A-D9 | VGB6 | C57BL/6NTac | |
14784A-D4 | VGB6 | C57BL/6NTac | |
14784A-F12 | VGB6 | C57BL/6NTac | |