Gene | Hoxd13 |
Chromosome | 2 |
Deletion Start | 74,668,313 |
Deletion End | 74,670,150 |
Deletion Size | 1,838 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 74,668,684 | 74,668,702 | CCACTTCGGCAACGGTTAC |
TUP | 74,668,703 | 74,668,723 | TACAGCTGCCGCATGTCGCAC |
TUR | 74,668,739 | 74,668,759 | GGACGACTTGAGAGCGTTCTG |
TDF | 74,669,869 | 74,669,893 | GCTGTTGTTTATGCTAGGAGATGTG |
TDP | 74,669,895 | 74,669,920 | CTTTAAACCAGCCGGACATGTGCGTC |
TDR | 74,669,968 | 74,669,992 | GGCATACTCATTCTCCAGTTCTTTG |
PCR Primers
Primer | Sequence |
SU | CTCCCAACCTGAACTTCGTT |
SD | CATACTGGCCTGGAGGGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 76 bp | + | + | - |
TDF | TDR | 124 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14790A-G3 | VGB6 | C57BL/6NTac | |
14790A-H8 | VGB6 | C57BL/6NTac | |