Gene | Gif |
Chromosome | 19 |
Deletion Start | 11,747,650 |
Deletion End | 11,763,322 |
Deletion Size | 15,673 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 11,748,549 | 11,748,567 | AACGTGGAGGCCCAGAAAC |
TUP | 11,748,568 | 11,748,591 | TCCTGACTTACCAGCTCATGGCCA |
TUR | 11,748,628 | 11,748,649 | TGTGCGTGGAAGATTCAGGTTG |
TDF | 11,762,645 | 11,762,664 | AACCCAGCACCCACATCAAG |
TDP | 11,762,665 | 11,762,689 | TGCCTCACAACAGCCTGTAATCCCA |
TDR | 11,762,690 | 11,762,710 | GTGGAGGACAGAAGAAGGAAC |
PCR Primers
Primer | Sequence |
SU | AAGCATCAGGAGGCTATTGG |
SD | CTGAGCTAGAAACCATCCTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 101 bp | + | + | - |
TDF | TDR | 66 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14849A-B3 | VGB6 | C57BL/6NTac | |
14849A-C8 | VGB6 | C57BL/6NTac | |
14849A-F4 | VGB6 | C57BL/6NTac | |
14849A-C9 | VGB6 | C57BL/6NTac | |