Gene | Mrpl47 |
Chromosome | 3 |
Deletion Start | 32,736,736 |
Deletion End | 32,727,563 |
Deletion Size | 9,174 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 32,736,332 | 32,736,354 | TCCGGCAGATGTTAAGTGATGAG |
TUP | 32,736,306 | 32,736,329 | TAGCTACGGCAACAGAAGCTGCGT |
TUR | 32,736,259 | 32,736,280 | GTTGGCAAGTGTCAGTGAAGAG |
TDF | 32,728,072 | 32,728,091 | GACTGCCACCTCAGGGTTTC |
TDP | 32,728,045 | 32,728,068 | TGGCAGACTGCCTTCAGTTCATGA |
TDR | 32,728,026 | 32,728,044 | GCACCGTACTCTCCTTGTC |
PCR Primers
Primer | Sequence |
SU | AGGGACAATCCACCAGTGAG |
SD | CTTTGCTGCTAGCCTTGCTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 66 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14886A-H7 | VGB6 | C57BL/6NTac | |
14886A-A2 | VGB6 | C57BL/6NTac | |