14888   Htra3     Status: Germline transmission achieved

GeneHtra3
Chromosome5
Deletion Start35,679,343
Deletion End35,652,901
Deletion Size26,443
Genome Build38
MGI IDMGI:1925808
NCBI Gene ID78558
BAC ID132J2
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 5

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF35,678,64835,678,667GGAACGAGCGTCAAGCAATC
TUP35,678,61935,678,646TTTCCTGGTCTCTGTCTTCAATTCCTGC
TUR35,678,59135,678,610CCAGCACAGCCTGACAGAAG
TDF35,653,13435,653,154TGCGTGCTGAGTGTCTTTCTC
TDP35,653,10835,653,129TCGGCAGAGGAGGCATCCAAGA
TDR35,653,07935,653,101GGCCATTGACTTTGACGATGATG

PCR Primers

PrimerSequence
SUCAGACCTGTCACCCAAAGTG
SDAAGGGAGAAGAGGTGGGATG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR77 bp++-
TDFTDR76 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
14888A-D4VGB6C57BL/6NTac
14888A-D6VGB6C57BL/6NTac
14888A-H11VGB6C57BL/6NTac
14888A-G3VGB6C57BL/6NTac
14888A-F5VGB6C57BL/6NTac
14888A-E1VGB6C57BL/6NTac