Gene | Gkn2 |
Chromosome | 6 |
Deletion Start | 87,373,399 |
Deletion End | 87,379,304 |
Deletion Size | 5,906 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 87,373,798 | 87,373,820 | TGGGTGATTACCTCTGCTTGTTG |
TUP | 87,373,821 | 87,373,848 | TGCCGATAGTGTAGACCAGGTATTGCTG |
TUR | 87,373,857 | 87,373,880 | TTGCCTCAGTGTCTTCAAGTTTAC |
TDF | 87,378,727 | 87,378,750 | GGCATAAAGCATTCCAGGAAAGAG |
TDP | 87,378,751 | 87,378,773 | AAGGCAGAGCCCATGAACAGGCA |
TDR | 87,378,779 | 87,378,797 | CTGTGACACCCGGCTACTG |
PCR Primers
Primer | Sequence |
SU | AACCAGTGCAAACCTGAGAG |
SD | AGCTGCAGAGAGACAGAGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14915A-B3 | VGB6 | C57BL/6NTac | |
14915A-B7 | VGB6 | C57BL/6NTac | |
14915A-C2 | VGB6 | C57BL/6NTac | |
14915A-H2 | VGB6 | C57BL/6NTac | |
14915A-D9 | VGB6 | C57BL/6NTac | |