Gene | Ccdc126 |
Chromosome | 6 |
Deletion Start | 49,334,063 |
Deletion End | 49,340,028 |
Deletion Size | 5,966 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 49,334,828 | 49,334,850 | GACAGGGTGTCTGTATGTAGTTC |
TUP | 49,334,855 | 49,334,880 | TTCCCTGGAACTCACCATGTAGACCA |
TUR | 49,334,887 | 49,334,908 | CAGGTGGATCTCTGTGACAAGG |
TDF | 49,339,922 | 49,339,942 | CAGCCACCAACACTACCAATG |
TDP | 49,339,946 | 49,339,971 | CCAATGGGAATTTGGTGCCGGTAACG |
TDR | 49,339,990 | 49,340,007 | TCTGACGCTGCCCGAAAC |
PCR Primers
Primer | Sequence |
SU | TGACCAGGGAACTTGTTAGG |
SD | CACTTCCTTTCTCTGCTCGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 81 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14931A-A6 | VGB6 | C57BL/6NTac | |
14931A-A9 | VGB6 | C57BL/6NTac | |
14931A-G11 | VGB6 | C57BL/6NTac | |
14931A-G4 | VGB6 | C57BL/6NTac | |
14931A-H11 | VGB6 | C57BL/6NTac | |
14931A-D3 | VGB6 | C57BL/6NTac | |