Gene | Sec61a1 |
Chromosome | 6 |
Deletion Start | 88,518,689 |
Deletion End | 88,505,070 |
Deletion Size | 13,620 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 88,518,057 | 88,518,078 | CAGATTGAGTTACCCTCCGTTC |
TUP | 88,518,033 | 88,518,056 | TTCACCTCCAGCAGGAGCAGATGA |
TUR | 88,518,008 | 88,518,028 | CCTCCCACACGAAACAAACAC |
TDF | 88,505,208 | 88,505,226 | CTGGGTGCTATCGGGTCTG |
TDP | 88,505,182 | 88,505,206 | AACTGGGATCCTGCTTGCGGTCACC |
TDR | 88,505,133 | 88,505,152 | CCACCTCGCTCTGTTCCTTG |
PCR Primers
Primer | Sequence |
SU | ACGAAGCGTCCACTAGTAAC |
SD | TGCTGATCCTCACCTGTCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14966A-A7 | VGB6 | C57BL/6NTac | |
14966A-B5 | VGB6 | C57BL/6NTac | |
14966A-B9 | VGB6 | C57BL/6NTac | |
14966A-H7 | VGB6 | C57BL/6NTac | |
14966A-C5 | VGB6 | C57BL/6NTac | |
14966A-G5 | VGB6 | C57BL/6NTac | |