Gene | Slc16a4 |
Chromosome | 3 |
Deletion Start | 107,292,442 |
Deletion End | 107,311,647 |
Deletion Size | 19,206 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 107,292,629 | 107,292,648 | AGCCAGGAACTTGCCCAAAC |
TUP | 107,292,653 | 107,292,676 | AAGATCAGAGGCCACCTTGGCTGA |
TUR | 107,292,682 | 107,292,702 | GGGAACAAACAGCTCAGCTTC |
TDF | 107,311,293 | 107,311,317 | ACAGGTGAGAAGCCCTATTTAAGTC |
TDP | 107,311,321 | 107,311,350 | TGGCTCACAATATGGACTGAGAACAGGAGA |
TDR | 107,311,420 | 107,311,440 | CCAGCCTGCAAGGTAGGAATG |
PCR Primers
Primer | Sequence |
SU | ATTCAAGGGCTGGTTCACAG |
SD | TGGTGACAGAATTACCATAGCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 148 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14974A-B11 | VGB6 | C57BL/6NTac | |
14974A-F4 | VGB6 | C57BL/6NTac | |
14974A-H5 | VGB6 | C57BL/6NTac | |
14974A-F10 | VGB6 | C57BL/6NTac | |
14974A-G9 | VGB6 | C57BL/6NTac | |