Gene | Slc45a1 |
Chromosome | 4 |
Deletion Start | 150,644,341 |
Deletion End | 150,629,508 |
Deletion Size | 14,834 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 150,644,248 | 150,644,269 | TCTCCCATCTCCAGCTACTCAG |
TUP | 150,644,223 | 150,644,245 | TCCGTGACAGGACACATCAGCCA |
TUR | 150,644,196 | 150,644,216 | GGGTGGCGTTTGAAGTTGTTG |
TDF | 150,629,814 | 150,629,834 | GTGGCAGGTTTGACTGATGTG |
TDP | 150,629,789 | 150,629,812 | CTGTCTCCCGGTCAGTTTGCAGGG |
TDR | 150,629,733 | 150,629,752 | CAGCTAAGCAGCGAGATGTC |
PCR Primers
Primer | Sequence |
SU | CTGATCTCCTGCTCCCTGAC |
SD | GGGCTAGCTGAACCTTTGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 102 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15030A-B11 | VGB6 | C57BL/6NTac | |
15030B-C8 | VGB6 | C57BL/6NTac | |
15030C-E11 | VGB6 | C57BL/6NTac | |