Gene | Trpm5 |
Chromosome | 7 |
Deletion Start | 143,089,605 |
Deletion End | 143,072,263 |
Deletion Size | 17,343 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 143,088,975 | 143,088,995 | GTGGGTGAGGAACGACCTTTG |
TUP | 143,088,947 | 143,088,973 | CTATGAAGTCGTGGCTTCGGGATGTCC |
TUR | 143,088,910 | 143,088,930 | CCTGTGCTCTGAGCTGCTTTC |
TDF | 143,072,947 | 143,072,967 | GCACCACATCCGGTCACTATC |
TDP | 143,072,919 | 143,072,946 | CCTTATCATGCACTATGGGAGGACCTGG |
TDR | 143,072,897 | 143,072,916 | CCCTGGGACTCCACACTCTG |
PCR Primers
Primer | Sequence |
SU | TGTCTTTGGAGGTTTCCAGG |
SD | AGCTAATGAGTGGGTCAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15060B-D6 | VGB6 | C57BL/6NTac | |
15060B-C3 | VGB6 | C57BL/6NTac | |
15060B-E10 | VGB6 | C57BL/6NTac | |