15239   Carf     Status: ES cell colonies screened / QC positives

GeneCarf
Chromosome1
Deletion Start60,132,029
Deletion End60,108,129
Deletion Size23,901
Genome Build38
MGI IDMGI:2182269
NCBI Gene ID241066
BAC ID388M8
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 1

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF60,108,76660,108,786AAGGGTCACGGCATTAGGAAG
TUP60,108,78860,108,811TGGGAACCACTGGCTGAAGACAAC
TUR60,108,82160,108,845CAACCATTTACACTGAGCTACATTC
TDF60,131,91060,131,929CACAAGCAGCAAACACAGAC
TDP60,131,93960,131,960TACTCGCCAGTCTCCAAGCCCA
TDR60,131,98160,132,004GGGACATACTGAGACTTCCACATC

PCR Primers

PrimerSequence
SUGACAGAATGAGAGAACTACG
SDGTGATATTGTCTATAAGTTCAC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR80 bp++-
TDFTDR95 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
15239A-C1VGB6C57BL/6NTac
15239A-G6VGB6C57BL/6NTac