Gene | Scg5 |
Chromosome | 2 |
Deletion Start | 113,827,561 |
Deletion End | 113,791,884 |
Deletion Size | 35,678 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 113,827,363 | 113,827,381 | GCTCACCAGGCCATGAATC |
TUP | 113,827,340 | 113,827,362 | TTGTTGGGCCACAGAGCATCGAA |
TUR | 113,827,315 | 113,827,338 | CTGTCAGTTTGGAAGAGTGCATAC |
TDF | 113,792,465 | 113,792,486 | TCTGTGACAGTTGCCCTCTATG |
TDP | 113,792,440 | 113,792,464 | TGTCCCTCATTCCCACCCAAATCCA |
TDR | 113,792,381 | 113,792,404 | GGTGAATGACTGGGTTTCTGGATG |
PCR Primers
Primer | Sequence |
SU | TTTGGGTCTCCCTAACTCCC |
SD | CCTACAAGCAAGTCAAAGGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 67 bp | + | + | - |
TDF | TDR | 106 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15299A-C1 | VGB6 | C57BL/6NTac | |
15299A-E10 | VGB6 | C57BL/6NTac | |
15299A-F11 | VGB6 | C57BL/6NTac | |
15299A-H5 | VGB6 | C57BL/6NTac | |