Gene | Snap25 |
Chromosome | 2 |
Deletion Start | 136,781,150 |
Deletion End | 136,756,133 |
Deletion Size | 25,018 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 136,756,336 | 136,756,356 | CGCCCAGACTCTTGACTTGTC |
TUP | 136,756,361 | 136,756,388 | AAGACGTTTAAGAGGGCAGGGTCCTTTA |
TUR | 136,756,402 | 136,756,426 | ACAACACACTGTAAGACATCCAAAG |
TDF | 136,780,658 | 136,780,678 | GATCATTCCCTCGACCACCTG |
TDP | 136,780,680 | 136,780,701 | TGGCTTTCTTCTCTGCCCAGGC |
TDR | 136,780,708 | 136,780,730 | CAAACAATGCTCCCACTTGTAAC |
PCR Primers
Primer | Sequence |
SU | TATGTGTCTGTTCCTGTGAGG |
SD | TGTTGTCATTCAGCAAACGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 91 bp | + | + | - |
TDF | TDR | 73 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15305A-A8 | VGB6 | C57BL/6NTac | |
15305A-H12 | VGB6 | C57BL/6NTac | |