Gene | Tacr1 |
Chromosome | 6 |
Deletion Start | 82,403,993 |
Deletion End | 82,403,613 |
Deletion Size | 381 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 82,403,668 | 82,403,691 | CTGAGTCTAACCAGTTTGTGCAAC |
TUP | 82,403,694 | 82,403,717 | ACCTGGCAAATTGTCCTTTGGGCA |
TUR | 82,403,732 | 82,403,752 | ACCACGGAAGTCACCACGATG |
TDF | 82,403,845 | 82,403,866 | CCTGCATGGCTGCATTCAATAC |
TDP | 82,403,869 | 82,403,893 | TGGTGAACTTCACCTACGCAGTCCA |
TDR | 82,403,894 | 82,403,914 | AGGCCGTAGTACCACACGTTG |
PCR Primers
Primer | Sequence |
SU | ACGCATGTTAACGGGAGTTG |
SD | TCTCCCATCCAGGCACTAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 85 bp | + | + | - |
TDF | TDR | 70 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15412B-B8 | VGB6 | C57BL/6NTac | |
15412B-C3 | VGB6 | C57BL/6NTac | |
15412C-E5 | VGB6 | C57BL/6NTac | |
15412C-H9 | VGB6 | C57BL/6NTac | |