Gene | Hpx |
Chromosome | 7 |
Deletion Start | 105,600,087 |
Deletion End | 105,591,681 |
Deletion Size | 8,407 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 105,600,052 | 105,600,073 | GGCGCTAAATATCCTGGTGTTG |
TUP | 105,600,032 | 105,600,051 | CTGGGCCTGTGCTGGTCCCT |
TUR | 105,599,982 | 105,600,005 | CTATCCCTAATTCTGGCCCTACTC |
TDF | 105,592,227 | 105,592,247 | CCCAGGGCACTCAAGTGTATG |
TDP | 105,592,200 | 105,592,226 | TCTTCCTGACAAAGGGAGGCAATAACC |
TDR | 105,592,154 | 105,592,173 | GGGCTCCCAAGTTCCTTCTC |
PCR Primers
Primer | Sequence |
SU | TGAGTTGGACCTGACATTGG |
SD | AGAGTTGATAACTTTTCAATCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15462A-B6 | VGB6 | C57BL/6NTac | |
15462A-D3 | VGB6 | C57BL/6NTac | |
15462A-G7 | VGB6 | C57BL/6NTac | |
15462A-H12 | VGB6 | C57BL/6NTac | |