| Gene | Hpx |
| Chromosome | 7 |
| Deletion Start | 105,600,087 |
| Deletion End | 105,591,681 |
| Deletion Size | 8,407 |
| Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
| Primer | Start | End | Sequence |
| TUF | 105,600,052 | 105,600,073 | GGCGCTAAATATCCTGGTGTTG |
| TUP | 105,600,032 | 105,600,051 | CTGGGCCTGTGCTGGTCCCT |
| TUR | 105,599,982 | 105,600,005 | CTATCCCTAATTCTGGCCCTACTC |
| TDF | 105,592,227 | 105,592,247 | CCCAGGGCACTCAAGTGTATG |
| TDP | 105,592,200 | 105,592,226 | TCTTCCTGACAAAGGGAGGCAATAACC |
| TDR | 105,592,154 | 105,592,173 | GGGCTCCCAAGTTCCTTCTC |
PCR Primers
| Primer | Sequence |
| SU | TGAGTTGGACCTGACATTGG |
| SD | AGAGTTGATAACTTTTCAATCC |
| LacInR | TTGACTGTAGCGGCTGATGTTG |
| LacInf | GGTAAACTGGCTCGGATTAGGG |
| NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
| NeoInF | TTCGGCTATGACTGGGCACAACAG |
| LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
| NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
| Forward Primer | Reverse Primer | Length | WT | HET | KO |
| SU | LacZRev | bp | - | + | + |
| TUF | TUR | 92 bp | + | + | - |
| TDF | TDR | 94 bp | + | + | - |
| NeoFwd | SD | bp | - | + | + |
| LacInf | LacInR | 210 bp | - | + | + |
| NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
| Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
| 15462A-B6 | VGB6 | C57BL/6NTac | |
| 15462A-D3 | VGB6 | C57BL/6NTac | |
| 15462A-G7 | VGB6 | C57BL/6NTac | |
| 15462A-H12 | VGB6 | C57BL/6NTac | |