Gene | Ftsjd1 |
Chromosome | 8 |
Deletion Start | 110,223,373 |
Deletion End | 110,221,063 |
Deletion Size | 2,311 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 110,221,731 | 110,221,752 | CGGCATGTCTCCCATTCACTTG |
TUP | 110,221,754 | 110,221,776 | TCACGGCTGATGGCAGCTTCGAT |
TUR | 110,221,784 | 110,221,805 | GCTTCCTGTTCACCTGGGTTTC |
TDF | 110,222,914 | 110,222,934 | CCAGCCTACCAGCATTTGTTC |
TDP | 110,222,935 | 110,222,956 | TTGGACTGCCTGCTGCACTCAC |
TDR | 110,222,986 | 110,223,006 | GCAAGAAAGGATGGGCAAGAC |
PCR Primers
Primer | Sequence |
SU | AGCCAGGTGAGTTGCTATGG |
SD | GTCTGAATGAAGGCACAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 75 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15502A-A12 | VGB6 | C57BL/6NTac | |
15502A-C7 | VGB6 | C57BL/6NTac | |
15502A-C9 | VGB6 | C57BL/6NTac | |
15502A-G6 | VGB6 | C57BL/6NTac | |
15502A-C12 | VGB6 | C57BL/6NTac | |
15502A-F11 | VGB6 | C57BL/6NTac | |