Gene | Gfap |
Chromosome | 11 |
Deletion Start | 102,897,114 |
Deletion End | 102,888,600 |
Deletion Size | 8,515 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 102,896,188 | 102,896,210 | GCTGTAGAGGTCAGGAAACAATC |
TUP | 102,896,153 | 102,896,180 | AAAGATCGGAACCAAGGGTCACACTCCA |
TUR | 102,896,123 | 102,896,142 | ATGCCCACCACCCAGCAAAG |
TDF | 102,889,499 | 102,889,520 | AAACCAGCCTGGACACCAAATC |
TDP | 102,889,473 | 102,889,496 | TGTCAGAAGGCCACCTCAAGAGGA |
TDR | 102,889,443 | 102,889,464 | CCCGCATCTCCACAGTCTTTAC |
PCR Primers
Primer | Sequence |
SU | GGTTCCTTGATCAATGGC |
SD | CTTCCAGCTCTGGCAACG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 78 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15646A-A9 | VGB6 | C57BL/6NTac | |
15646A-B4 | VGB6 | C57BL/6NTac | |
15646A-B11 | VGB6 | C57BL/6NTac | |
15646A-E2 | VGB6 | C57BL/6NTac | |
15646A-E4 | VGB6 | C57BL/6NTac | |