Gene | Tha1 |
Chromosome | 11 |
Deletion Start | 117,873,396 |
Deletion End | 117,868,419 |
Deletion Size | 4,978 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 117,872,821 | 117,872,843 | CCACATCAGGAACAGGGAAGAAC |
TUP | 117,872,787 | 117,872,815 | TTTGAGACAGGTCTTACTACAAGGAGGGC |
TUR | 117,872,760 | 117,872,783 | CAGCCAATGAATGAAGGAGAGTAG |
TDF | 117,869,037 | 117,869,056 | GGTGCAACCAGCAGAGTCAG |
TDP | 117,869,012 | 117,869,035 | AACCAGGCCAGAGTAGAGCCTCCA |
TDR | 117,868,945 | 117,868,963 | GGGCCTCAGATGTGGGAAC |
PCR Primers
Primer | Sequence |
SU | TTTCCCAGAGTGGCTGAGAC |
SD | CAGTCCACCTCTGACAACTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 84 bp | + | + | - |
TDF | TDR | 112 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16277A-A9 | VGB6 | C57BL/6NTac | |
16277A-A11 | VGB6 | C57BL/6NTac | |
16277A-C10 | VGB6 | C57BL/6NTac | |
16277A-H12 | VGB6 | C57BL/6NTac | |
16277A-B10 | VGB6 | C57BL/6NTac | |
16277A-D2 | VGB6 | C57BL/6NTac | |