Gene | Gypc |
Chromosome | 18 |
Deletion Start | 32,559,822 |
Deletion End | 32,529,941 |
Deletion Size | 29,882 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 18
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 32,559,520 | 32,559,540 | CAAGTCAAGTCAAGCGGTCAG |
TUP | 32,559,496 | 32,559,517 | TCAACTTCGCACCAGGGAGCCC |
TUR | 32,559,445 | 32,559,463 | GGGCCAGAAAGAGCTGTTG |
TDF | 32,530,168 | 32,530,186 | TGGCCTTGGTCCTGGTCTG |
TDP | 32,530,140 | 32,530,167 | CCTCCTCTTTCTCATGCTTCGCTACCTG |
TDR | 32,530,093 | 32,530,113 | TCTGTGCCTTTGGCCTCATTG |
PCR Primers
Primer | Sequence |
SU | TCTGATAGTGGCAGATGG |
SD | TCGTCTTGAGCTGCATGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16375A-F1 | VGB6 | C57BL/6NTac | |
16375C-B11 | VGB6 | C57BL/6NTac | |