Gene | N4bp2l1 |
Chromosome | 5 |
Deletion Start | 150,594,433 |
Deletion End | 150,572,677 |
Deletion Size | 21,757 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 150,593,574 | 150,593,594 | CCTGCCCTGCACTTGGTATTC |
TUP | 150,593,540 | 150,593,567 | CGTTGGACTGTTTCTCTCTCCTTGCTGG |
TUR | 150,593,491 | 150,593,511 | CAAAGGGTGACGGTGGGAAAG |
TDF | 150,573,172 | 150,573,190 | GCAGGGCAGCATGAGAAAC |
TDP | 150,573,147 | 150,573,171 | CGCAGCAGAGCTGTCGAAGTACCTT |
TDR | 150,573,110 | 150,573,130 | CCTCAGGAGACCAGGCAGAAG |
PCR Primers
Primer | Sequence |
SU | GCTTCCACAGTGACTGCAG |
SD | GTGGAGAGGCTGGATCTGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 104 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17004A-B1 | VGB6 | C57BL/6NTac | |
17004A-H7 | VGB6 | C57BL/6NTac | |
17004A-C8 | VGB6 | C57BL/6NTac | |
17004A-C1 | VGB6 | C57BL/6NTac | |
17004A-H5 | VGB6 | C57BL/6NTac | |