Gene | Hoxa9 |
Chromosome | 6 |
Deletion Start | 52,226,101 |
Deletion End | 52,224,183 |
Deletion Size | 1,919 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 52,225,452 | 52,225,469 | CAGCGCGTCAGCTTTCTC |
TUP | 52,225,431 | 52,225,451 | TGGAGCCTGCCTTCGTCCTCG |
TUR | 52,225,383 | 52,225,405 | CCAAACACCAACTTCTGGTTCTC |
TDF | 52,224,638 | 52,224,659 | TGAGACTTTCTTGGCTCTGTTG |
TDP | 52,224,610 | 52,224,635 | AGTGACCCTCCGTGGATCTGTCTGCC |
TDR | 52,224,569 | 52,224,589 | GGATGCCGCTGAATTGGTTAG |
PCR Primers
Primer | Sequence |
SU | GAGTACAGAGGCAAGGCCAG |
SD | GAATGATCTGCCACACGAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 91 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17012A-H12 | VGB6 | C57BL/6NTac | |
17012A-F4 | VGB6 | C57BL/6NTac | |
17012A-C6 | VGB6 | C57BL/6NTac | |
17012A-A8 | VGB6 | C57BL/6NTac | |