Gene | Efna1 |
Chromosome | 3 |
Deletion Start | 89,279,539 |
Deletion End | 89,272,476 |
Deletion Size | 7,064 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 89,279,471 | 89,279,488 | GACCGCCACATCGTCTTC |
TUP | 89,279,443 | 89,279,470 | TGGAACAGTTCAAATCCCAAGTAAGCCC |
TUR | 89,279,391 | 89,279,409 | ACCCTGCGAAAGGCCATTG |
TDF | 89,272,972 | 89,272,993 | TGCTTGAAGCTGAAGGTGACTG |
TDP | 89,272,934 | 89,272,962 | AAATCAGTGAGTGTCAGGCCCTGTGGACC |
TDR | 89,272,906 | 89,272,924 | ACCACGCCCAGCACAGATG |
PCR Primers
Primer | Sequence |
SU | TTCCTCCACCTCCAACGTAG |
SD | TGCACATTATGGCTTCCTTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 98 bp | + | + | - |
TDF | TDR | 88 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17049A-G9 | VGB6 | C57BL/6NTac | |
17049A-G6 | VGB6 | C57BL/6NTac | |
17049A-D1 | VGB6 | C57BL/6NTac | |
17049A-F12 | VGB6 | C57BL/6NTac | |
17049A-A4 | VGB6 | C57BL/6NTac | |