Gene | Agr2 |
Chromosome | 12 |
Deletion Start | 36,003,918 |
Deletion End | 35,995,520 |
Deletion Size | 8,399 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 12
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 35,995,530 | 35,995,550 | CAGTGTCTGCAATCCTGCTTC |
TUP | 35,995,552 | 35,995,576 | TGTGGCCATTTCTGGTACCTTGGCC |
TUR | 35,995,580 | 35,995,600 | TCCAGATTTGACTGTGGTGTC |
TDF | 36,003,209 | 36,003,231 | TGCTTCTGCACTAGCCACAATAG |
TDP | 36,003,234 | 36,003,260 | TGATGCTGACAGAGCTTGAATGGGTTC |
TDR | 36,003,296 | 36,003,314 | GCCCGGTTCTCAGTTCTTC |
PCR Primers
Primer | Sequence |
SU | CCCACATTACCTTCCAGCAC |
SD | AACAAACCAGAACCAAATAGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 106 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17054A-D1 | VGB6 | C57BL/6NTac | |
17054A-H8 | VGB6 | C57BL/6NTac | |
17054A-G6 | VGB6 | C57BL/6NTac | |