Gene | Fgfr4 |
Chromosome | 13 |
Deletion Start | 55,168,259 |
Deletion End | 55,155,493 |
Deletion Size | 12,767 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 55,155,504 | 55,155,523 | GGCCCTGTTGAGCATCTTTC |
TUP | 55,155,529 | 55,155,552 | ACACCAGCTTTGTCCCTTGAGGCC |
TUR | 55,155,572 | 55,155,591 | TCCCACCTTAGAGGCCATAC |
TDF | 55,168,085 | 55,168,103 | CACCTGCTCCTCCAGTGAC |
TDP | 55,168,109 | 55,168,130 | TTTCAGCCACGACCCTTTGCCC |
TDR | 55,168,188 | 55,168,209 | CCGCGTAGCCCATACAACATTG |
PCR Primers
Primer | Sequence |
SU | CACCATCTCTGCTTCCTTCC |
SD | AGGCCTCTAGGTTGTTTGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 125 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17119A-B3 | VGB6 | C57BL/6NTac | |
17119A-B10 | VGB6 | C57BL/6NTac | |
17119A-D2 | VGB6 | C57BL/6NTac | |
17119A-D11 | VGB6 | C57BL/6NTac | |
17119A-F10 | VGB6 | C57BL/6NTac | |
17119A-D5 | VGB6 | C57BL/6NTac | |