Gene | Slc4a1 |
Chromosome | 11 |
Deletion Start | 102,361,392 |
Deletion End | 102,350,270 |
Deletion Size | 11,123 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 102,360,906 | 102,360,924 | GACAGGGCAGCCAGGTATG |
TUP | 102,360,883 | 102,360,905 | TCTGGGACAAGGACACAGACCCA |
TUR | 102,360,836 | 102,360,855 | CCTGCTGCTTGGCCTCAATG |
TDF | 102,350,652 | 102,350,674 | TGACAGGGTGAAAGGCTAATGAG |
TDP | 102,350,623 | 102,350,650 | CGCACAGGGTGCATCTCTTGTATCATCA |
TDR | 102,350,596 | 102,350,618 | CCACACCGAATGTCCCAAATAAC |
PCR Primers
Primer | Sequence |
SU | ATCATGTTCTGGGAGTTGGC |
SD | AAGTGTCCTCCGTCTCTCCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 89 bp | + | + | - |
TDF | TDR | 79 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17193A-A6 | VGB6 | C57BL/6NTac | |
17193A-F2 | VGB6 | C57BL/6NTac | |
17193A-F5 | VGB6 | C57BL/6NTac | |
17193A-F8 | VGB6 | C57BL/6NTac | |
17193A-H5 | VGB6 | C57BL/6NTac | |