Gene | Arl1 |
Chromosome | 10 |
Deletion Start | 88,743,071 |
Deletion End | 88,731,564 |
Deletion Size | 11,508 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 88,731,900 | 88,731,917 | ATCCTTGCGCTGCTCCTG |
TUP | 88,731,919 | 88,731,941 | CTGCTCGCCCGCTGTAGTTAGCT |
TUR | 88,731,958 | 88,731,982 | ACTTCACAATCCACCTAACTCCATC |
TDF | 88,742,445 | 88,742,468 | TGGACAGTTACTATGAGGTTGAGG |
TDP | 88,742,471 | 88,742,500 | AGCCTGGTTTACTTAGAAAGATCAAGGCCA |
TDR | 88,742,515 | 88,742,535 | GGGATTGCACCAGAGTTTCAC |
PCR Primers
Primer | Sequence |
SU | AGTTGTGGCGTTCATTTCTG |
SD | TTTATACAAACAAGATGCAACCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 91 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17311A-H9 | VGB6 | C57BL/6NTac | |
17311A-A4 | VGB6 | C57BL/6NTac | |
17311A-B12 | VGB6 | C57BL/6NTac | |
17311A-F3 | VGB6 | C57BL/6NTac | |
17311A-E2 | VGB6 | C57BL/6NTac | |
17311A-C8 | VGB6 | C57BL/6NTac | |