Gene | Atp6v0d1 |
Chromosome | 8 |
Deletion Start | 105,565,909 |
Deletion End | 105,539,326 |
Deletion Size | 26,584 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 105,565,610 | 105,565,628 | GCCTTCAAGAACCGCAGTG |
TUP | 105,565,588 | 105,565,608 | TTTACCTGGGCTCGGGTTGCC |
TUR | 105,565,565 | 105,565,586 | AGGACTAGCTCGACGAGGTTAG |
TDF | 105,539,966 | 105,539,987 | GGCTGTCCTAGAATCCACTTTG |
TDP | 105,539,938 | 105,539,964 | AGACTAGGATGGCCTTGAACTCCCAGA |
TDR | 105,539,918 | 105,539,936 | TGGTGGCACACACAGGTAG |
PCR Primers
Primer | Sequence |
SU | ACTCCAGAGTAACGCATGC |
SD | AGGAAATGAAACTGGTAACAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 64 bp | + | + | - |
TDF | TDR | 70 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17315A-A6 | VGB6 | C57BL/6NTac | |
17315A-D3 | VGB6 | C57BL/6NTac | |
17315A-F3 | VGB6 | C57BL/6NTac | |
17315A-E5 | VGB6 | C57BL/6NTac | |