Gene | Gnat2 |
Chromosome | 3 |
Deletion Start | 108,100,898 |
Deletion End | 108,093,252 |
Deletion Size | 7,647 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 108,093,327 | 108,093,346 | GCTGACAAGGAAGCCAAGAC |
TUP | 108,093,349 | 108,093,370 | TCAAGCTGCTGTTGCTCGGTGA |
TUR | 108,093,400 | 108,093,422 | CTGAACCAGAGGGAGAGGGATAC |
TDF | 108,100,254 | 108,100,276 | TCTGGGAAAGAGCAGACAGATAC |
TDP | 108,100,278 | 108,100,301 | CCAGAGCCACTGACCGTTCCAAGG |
TDR | 108,100,303 | 108,100,324 | GGGTCTGACTTTCTGGTAGGTG |
PCR Primers
Primer | Sequence |
SU | CAGAAGCCAGATCATTTCCC |
SD | ATGGTAGTCCATCAGGCAGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17376A-B1 | VGB6 | C57BL/6NTac | |
17376A-C6 | VGB6 | C57BL/6NTac | |
17376A-H7 | VGB6 | C57BL/6NTac | |
17376A-C12 | VGB6 | C57BL/6NTac | |
17376A-D8 | VGB6 | C57BL/6NTac | |
17376A-C11 | VGB6 | C57BL/6NTac | |