Gene | Napb |
Chromosome | 2 |
Deletion Start | 148,732,360 |
Deletion End | 148,697,324 |
Deletion Size | 35,037 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 148,732,168 | 148,732,187 | GCGCAACTGCTTAGGGTTAC |
TUP | 148,732,142 | 148,732,164 | ATTCCCAGTGGCCCACGCTCTGT |
TUR | 148,732,099 | 148,732,117 | GCCCAAGGGATGCGATGAG |
TDF | 148,697,492 | 148,697,513 | AAACCAGGTGAAGGAGTTTGAC |
TDP | 148,697,461 | 148,697,486 | ATCACGTTTGGATCAGTGGCTGACCA |
TDR | 148,697,426 | 148,697,449 | CCCTTGGATGGACTTCTTGATACG |
PCR Primers
Primer | Sequence |
SU | TCTACCTCCAAGGGTCCAAG |
SD | GCTATAAAGGAAAGCCAAACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 89 bp | + | + | - |
TDF | TDR | 88 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17421B-A2 | VGB6 | C57BL/6NTac | |
17421B-A8 | VGB6 | C57BL/6NTac | |
17421B-A11 | VGB6 | C57BL/6NTac | |
17421B-A12 | VGB6 | C57BL/6NTac | |
17421B-D7 | VGB6 | C57BL/6NTac | |
17421B-F6 | VGB6 | C57BL/6NTac | |