Gene | Nr1h3 |
Chromosome | 2 |
Deletion Start | 91,193,656 |
Deletion End | 91,184,275 |
Deletion Size | 9,382 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 91,192,753 | 91,192,773 | ACCCATTCTCCCGTGCTTCTC |
TUP | 91,192,728 | 91,192,751 | TGGGCTCAGATTCTGCAACGGAGT |
TUR | 91,192,691 | 91,192,710 | CCCTGGTCTCCTGCATCTTG |
TDF | 91,185,132 | 91,185,154 | AAACCTGGAGACCTGTTAGTGAC |
TDP | 91,185,101 | 91,185,129 | CCTAGCCTGAGGAAGTTGAGTTACAGGGT |
TDR | 91,185,081 | 91,185,100 | ATGGCGGGAGCAGGAAGAAC |
PCR Primers
Primer | Sequence |
SU | GAGAGACTCCTGAATTCAGC |
SD | CTTGGCCTTCCTGTTTCAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 74 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17433A-C12 | VGB6 | C57BL/6NTac | |
17433A-G3 | VGB6 | C57BL/6NTac | |
17433A-A7 | VGB6 | C57BL/6NTac | |
17433A-B9 | VGB6 | C57BL/6NTac | |