Gene | Ptgds |
Chromosome | 2 |
Deletion Start | 25,469,670 |
Deletion End | 25,467,302 |
Deletion Size | 2,369 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 25,469,522 | 25,469,542 | CCCACACCCAAAGAAGCAGAG |
TUP | 25,469,499 | 25,469,521 | CCCTCAGGCCAGAGCCAGGCTTT |
TUR | 25,469,463 | 25,469,481 | GGCTGACAGTGCCCAGAAC |
TDF | 25,468,142 | 25,468,161 | TGGTGGAGGCCAACTATGAC |
TDP | 25,468,107 | 25,468,131 | TGCTATTCAGCAGAGGCACCAAGGG |
TDR | 25,468,054 | 25,468,073 | GTGGGCTGGGATACCTACTG |
PCR Primers
Primer | Sequence |
SU | GCAGGCAGAGGTTTCTTC |
SD | AATGGCACTAGTGTGGAGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 108 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17473A-A9 | VGB6 | C57BL/6NTac | |
17473A-A10 | VGB6 | C57BL/6NTac | |
17473A-B12 | VGB6 | C57BL/6NTac | |