Gene | Stk17b |
Chromosome | 1 |
Deletion Start | 53,776,635 |
Deletion End | 53,757,475 |
Deletion Size | 19,161 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 53,776,615 | 53,776,635 | TCTCGGAGGAGATTCGATTGC |
TUP | 53,776,585 | 53,776,614 | CGAAGTGTCTCAGGCTTGCTAACTACAACC |
TUR | 53,776,503 | 53,776,527 | CAAAGTTTCCTTACCTCCCAAGTTC |
TDF | 53,758,249 | 53,758,270 | GTGCTACTGAGTGGTGAGGAAG |
TDP | 53,758,217 | 53,758,246 | TGGAATGCAGGCTAAAGACATGAGTCATGA |
TDR | 53,758,174 | 53,758,198 | GACAGGGTTGAAACTAGATAGACAG |
PCR Primers
Primer | Sequence |
SU | TACCTCCTTCCACCTGCATC |
SD | TACCCTTGACAGCATTTCCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 133 bp | + | + | - |
TDF | TDR | 97 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17517A-B11 | VGB6 | C57BL/6NTac | |
17517A-C4 | VGB6 | C57BL/6NTac | |
17517A-E2 | VGB6 | C57BL/6NTac | |
17517A-B4 | VGB6 | C57BL/6NTac | |